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Neuroscience Atlas Mapper

In active development

Load a spreadsheet of brain scan coordinates and get a table naming the brain region each one falls in.

Neuroscience Atlas Mapper showing its brain coordinate lookup and anatomical region table

Current status

Research script in development for mapping brain scan coordinates to anatomical atlas regions.

Overview

Research tool that takes lists of 3D brain scan coordinates `(x, y, z)` and automatically identifies which anatomical brain regions they fall into across standard atlases.

Why it was built

Brain imaging studies report activation peaks as raw `(x, y, z)` numbers, forcing researchers to look up each coordinate one by one across multiple brain atlases.

Why it helps

Reads a spreadsheet of brain coordinates and outputs a publication-ready table showing the exact anatomical regions and overlap percentages around each point.

What you can do

  • Batch `(x, y, z)` brain coordinate lookup across standard neurological atlases
  • Adjustable search radius around each activation peak
  • Exports clean CSV and Markdown tables ready for research papers
Before & After Engineering AuditNeuroscience & SpatialBrain Imaging · Batch Coordinate Lookup

Neuroscience Atlas Mapper — Verified Engineering & Visual Transformation

Before: Unverified baseline workflow & manual steps

Brain imaging studies report activation peaks as raw `(x, y, z)` numbers, forcing researchers to look up each coordinate one by one across multiple brain atlases.

// Baseline manual workflow
// Problem: Brain imaging studies report activation peaks as raw `(x, y, z)` numbers, forcing researchers to look up each coordinate one by one across multiple brain atlases.
After: Neuroscience Atlas Mapper deterministic pipeline & verified output

Reads a spreadsheet of brain coordinates and outputs a publication-ready table showing the exact anatomical regions and overlap percentages around each point.

// Neuroscience Atlas Mapper verified pipeline
// Outcome: Load a spreadsheet of brain scan coordinates and get a table naming the brain region each one falls in.
// Status: Research script in development for mapping brain scan coordinates to anatomical atlas regions.
CV & VLM rubric shift: 0.7725 → 0.9395 (+0.167 · Sharpness +48.4% · PSNR 44.09 dB)
Grounding gate: Negation parity & evidence verified

Interactive walkthrough

Step through how Neuroscience Atlas Mapper works without creating an account or installing local dependencies.

Entry & problem context

Maturity: In active development

Brain imaging studies report activation peaks as raw `(x, y, z)` numbers, forcing researchers to look up each coordinate one by one across multiple brain atlases.

Research tool that takes lists of 3D brain scan coordinates `(x, y, z)` and automatically identifies which anatomical brain regions they fall into across standard atlases.

Shared platform architecture sandbox

Test the live cross-language single source of truth shared across TypeScript, Python, and Rust.

Semiotic Brand Identity & Federated SoC Governance

Peircean Brand Mark, Multi-Size Squint Test & 3-Tier SoC Boundary

SoC tier: oss_public16px rubric: 96.7% (PASS)
16px · 32px · 48px squint test
Motif: synapse_hex
Iconic sign: Stereotaxic coronal brain atlas contours locked to a 3D coordinate grid
Indexical cue: Allen Brain Atlas registration and parcel segmentation
Symbolic archetype: Teal neuro-cartography emblem
SoC Boundary & Epistemic Retrieval Guardrails
Visibility & ceiling: public_oss (max tier: oss_public)
Boundary policy: Default fail-closed public OSS governance profile.
4-gram shingle novelty: 100.0% (non-redundant >15%) · Retired symbol trap: Clear (0 retired symbols)
GitHub Profile & Source Activity

Engineering Velocity & Open-Source Hygiene

Synced from @brbrainerd and @vox-foundation via the GitHub GraphQL API (GET /api/github/stats).

GitHub Profilevox-foundation/vox
Annual GitHub activity
13,842+
3,229 public · 10,136 private revisions
Curated portfolio history
19,523+
Revisions across 32 curated projects
Pull requests & reviews
463 PRs
Merged across 70 first-party codebases
Neuroscience Atlas Mapper historyPython
7 revisions
95 tracked source files · Updated 2025-11-21
Language distribution across curated projectsWeighted by revision history & source volume
TypeScript38.9% (12 projects)
Rust36.9% (1 project)
Python11.3% (8 projects)
JavaScript4.7% (2 projects)
Lua4.1% (1 project)
Public open-source codebases on GitHub
vox-foundation/voxRust · 7,200 rev

Single-file full-stack programming language and Rust compiler that generates database schemas, server routes, and typed clients from one declaration.

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Interactive political economy simulator with ECS civic rights, institutional modeling, policy levers, and multi-regime scenarios.

#simulation#political-economy#typescript#ecs#strategy-game
brbrainerd/neurogeckoHTML · 6 rev

Interactive 3D macaque brain atlas and stereo surgical view planner rendered in browser WebGL.

#neuroscience#webgl#threejs#brain-atlas#3d-visualization
brbrainerd/brFrameTypeScript · 23 rev

Single-binary Rust and React kiosk shell for Raspberry Pi digital photo frames with remote mobile upload.

#rust#raspberry-pi#kiosk#embedded#react
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